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feed(self,
handle,
consumer)
Feed in COMPASS ouput |
source code
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_scan_names(self,
handle,
consumer)
Ali1: 60456.blo.gz.aln Ali2: allscop//14984.blo.gz.aln |
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_scan_threshold(self,
handle,
consumer)
Threshold of effective gap content in columns: 0.5 |
source code
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_scan_lengths(self,
handle,
consumer)
length1=388 filtered_length1=386 length2=145
filtered_length2=137 |
source code
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_scan_profilewidth(self,
handle,
consumer)
Nseqs1=399 Neff1=12.972 Nseqs2=1 Neff2=6.099 |
source code
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_scan_scores(self,
handle,
consumer)
Smith-Waterman score = 37 Evalue = 5.75e+02 |
source code
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_scan_alignment(self,
handle,
consumer)
QUERY 2 LSDRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPN
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
QUERY 2 LSDRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPN |
source code
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