Trees | Indices | Help |
---|
|
|
|||
MEMEMotif A subclass of Motif used in parsing MEME (and MAST) output. |
|||
MEMEInstance A class describing the instances of a MEME motif, and the data thereof. |
|||
MEMERecord A class for holding the results of a MEME run. |
|||
MEMEParser A parser for the text output of the MEME program (OBSOLETE). |
|||
_MEMEScanner Scanner for MEME output (OBSOLETE). |
|||
_MEMEConsumer Consumer that can receive events from MEME Scanner (OBSOLETE). |
|||
_MASTConsumer Consumer that can receive events from _MASTScanner (OBSOLETE). |
|||
MASTParser Parser for MAST text output (OBSOLETE). |
|||
_MASTScanner Scanner for MAST text output (OBSOLETE). |
|||
MASTRecord The class for holding the results from a MAST run (OBSOLETE). |
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|
|||
StringTypes =
|
|||
__package__ =
|
|||
xml_support = 1
|
|
Parses the text output of the MEME program into MEME.Record object. Example: >>> f = open("meme.output.txt") >>> from Bio.Motif.Parsers import MEME >>> record = MEME.read(f) >>> for motif in record.motifs: ... for instance in motif.instances: ... print instance.motif_name, instance.sequence_name, instance.strand, instance.pvalue |
Trees | Indices | Help |
---|
Generated by Epydoc 3.0.1 on Wed Jul 14 01:35:42 2010 | http://epydoc.sourceforge.net |