Methods for serializing a PhyloXML object to XML.
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write(self,
file,
encoding=None,
indent=False) |
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phylogeny(self,
obj)
Serialize a {http://www.phyloxml.org}phylogeny and its subnodes, in
order. |
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clade(self,
obj)
Serialize a {http://www.phyloxml.org}clade and its subnodes, in
order. |
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accession(self,
obj)
Serialize a {http://www.phyloxml.org}accession and its subnodes, in
order. |
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annotation(self,
obj)
Serialize a {http://www.phyloxml.org}annotation and its subnodes, in
order. |
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binary_characters(self,
obj)
Serialize a binary_characters node and its subnodes. |
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clade_relation(self,
obj)
Serialize a {http://www.phyloxml.org}clade_relation and its subnodes,
in order. |
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color(self,
obj)
Serialize a {http://www.phyloxml.org}color and its subnodes, in
order. |
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confidence(self,
obj)
Serialize a {http://www.phyloxml.org}confidence and its subnodes, in
order. |
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date(self,
obj)
Serialize a {http://www.phyloxml.org}date and its subnodes, in order. |
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distribution(self,
obj)
Serialize a {http://www.phyloxml.org}distribution and its subnodes,
in order. |
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domain_architecture(self,
obj)
Serialize a {http://www.phyloxml.org}domain_architecture and its
subnodes, in order. |
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events(self,
obj)
Serialize a {http://www.phyloxml.org}events and its subnodes, in
order. |
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id(self,
obj)
Serialize a {http://www.phyloxml.org}id and its subnodes, in order. |
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node_id(self,
obj)
Serialize a {http://www.phyloxml.org}node_id and its subnodes, in
order. |
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point(self,
obj)
Serialize a {http://www.phyloxml.org}point and its subnodes, in
order. |
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polygon(self,
obj)
Serialize a {http://www.phyloxml.org}polygon and its subnodes, in
order. |
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property(self,
obj)
Serialize a {http://www.phyloxml.org}property and its subnodes, in
order. |
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reference(self,
obj)
Serialize a {http://www.phyloxml.org}reference and its subnodes, in
order. |
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sequence(self,
obj)
Serialize a {http://www.phyloxml.org}sequence and its subnodes, in
order. |
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sequence_relation(self,
obj)
Serialize a {http://www.phyloxml.org}sequence_relation and its
subnodes, in order. |
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taxonomy(self,
obj)
Serialize a {http://www.phyloxml.org}taxonomy and its subnodes, in
order. |
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uri(self,
obj)
Serialize a {http://www.phyloxml.org}uri and its subnodes, in order. |
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alt(self,
obj)
Serialize a simple {http://www.phyloxml.org}alt node. |
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branch_length(self,
obj)
Serialize a simple {http://www.phyloxml.org}branch_length node. |
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lat(self,
obj)
Serialize a simple {http://www.phyloxml.org}lat node. |
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long(self,
obj)
Serialize a simple {http://www.phyloxml.org}long node. |
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maximum(self,
obj)
Serialize a simple {http://www.phyloxml.org}maximum node. |
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minimum(self,
obj)
Serialize a simple {http://www.phyloxml.org}minimum node. |
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value(self,
obj)
Serialize a simple {http://www.phyloxml.org}value node. |
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width(self,
obj)
Serialize a simple {http://www.phyloxml.org}width node. |
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blue(self,
obj)
Serialize a simple {http://www.phyloxml.org}blue node. |
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duplications(self,
obj)
Serialize a simple {http://www.phyloxml.org}duplications node. |
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green(self,
obj)
Serialize a simple {http://www.phyloxml.org}green node. |
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losses(self,
obj)
Serialize a simple {http://www.phyloxml.org}losses node. |
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red(self,
obj)
Serialize a simple {http://www.phyloxml.org}red node. |
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speciations(self,
obj)
Serialize a simple {http://www.phyloxml.org}speciations node. |
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bc(self,
obj)
Serialize a simple {http://www.phyloxml.org}bc node. |
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code(self,
obj)
Serialize a simple {http://www.phyloxml.org}code node. |
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common_name(self,
obj)
Serialize a simple {http://www.phyloxml.org}common_name node. |
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desc(self,
obj)
Serialize a simple {http://www.phyloxml.org}desc node. |
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description(self,
obj)
Serialize a simple {http://www.phyloxml.org}description node. |
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location(self,
obj)
Serialize a simple {http://www.phyloxml.org}location node. |
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mol_seq(self,
obj)
Serialize a simple {http://www.phyloxml.org}mol_seq node. |
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name(self,
obj)
Serialize a simple {http://www.phyloxml.org}name node. |
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rank(self,
obj)
Serialize a simple {http://www.phyloxml.org}rank node. |
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scientific_name(self,
obj)
Serialize a simple {http://www.phyloxml.org}scientific_name node. |
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symbol(self,
obj)
Serialize a simple {http://www.phyloxml.org}symbol node. |
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synonym(self,
obj)
Serialize a simple {http://www.phyloxml.org}synonym node. |
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type(self,
obj)
Serialize a simple {http://www.phyloxml.org}type node. |
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Inherited from object :
__delattr__ ,
__format__ ,
__getattribute__ ,
__hash__ ,
__new__ ,
__reduce__ ,
__reduce_ex__ ,
__repr__ ,
__setattr__ ,
__sizeof__ ,
__str__ ,
__subclasshook__
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