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I/O function wrappers for phylogenetic tree formats.
This API follows the same semantics as Biopython's SeqIO and AlignIO.
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Iteratively parse a file and return each of the trees it contains. If a file only contains one tree, this still returns an iterable object that contains one element. Example: >>> trees = parse('../../Tests/PhyloXML/apaf.xml', 'phyloxml') >>> for tree in trees: ... print tree.rooted True |
Parse a file in the given format and return a single tree. Raises a ValueError if there are zero or multiple trees -- if this occurs, use parse() instead to get the complete sequence of trees. |
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supported_formats
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Trees | Indices | Help |
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