Package Bio :: Module EZRetrieve
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Module EZRetrieve

source code

This module contains code to access EZRetrieve (DEPRECATED).

This module is now deprecated, and will be removed in a future release of Biopython.

This is a very simple interface to the EZRetrieve website described in:

Zhang, H., Ramanathan, Y., Soteropoulos, P., Recce, M., and Tolias, P.P. (2002). EZ-Retrieve: A web-server for batch retrieval of coordinate-specified human DNA sequences and underscoring putative transcription factor-binding sites. Nucl. Acids. Res. 2002 30: e121. http://dx.doi.org/10.1093/nar/gnf120

Functions: retrieve_single Retrieve a single sequence from EZRetrieve. parse_single Parse the results from EZRetrieve into FASTA format.

Functions [hide private]
 
retrieve_single(id, from_, to, retrieve_by=None, organism=None, parse_results=1) source code
 
parse_single(handle)
Return a FASTA-formatted string for the sequence.
source code
Variables [hide private]
  __package__ = 'Bio'
  __warningregistry__ = {('Bio.EZRetrieve is deprecated, and wil...
Function Details [hide private]

parse_single(handle)

source code 

Return a FASTA-formatted string for the sequence. May raise an AssertionError if there was a problem retrieving the sequence.


Variables Details [hide private]

__warningregistry__

Value:
{('Bio.EZRetrieve is deprecated, and will be removed in a future relea\
se of Biopython.  If you want to continue to use this code, please get\
 in contact with the Biopython developers via the mailing lists to avo\
id its permanent removal from Biopython.',
  <type 'exceptions.DeprecationWarning'>,
  24): True}