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4
5 """
6 Parser and code for dealing with the standalone version of AlignAce, a motif search program (DEPRECATED).
7
8 It also includes a very simple interface to CompareACE tool.
9 http://atlas.med.harvard.edu/
10
11 Now superseded by Bio.Motif
12
13 Class mapping:
14 Bio.AlignAce.AlignAceStandalone -> Bio.Motif.Applications.AlignAceCommandline
15 Bio.AlignAce.CompareAceStandalone -> Bio.Motif.Applications.CompareAceCommandline
16 Bio.Alignace.Motif -> Bio.Motif.Motif
17 Bio.AlignAce.Parser.CompareAceParser -> Bio.Motif.CompareAceParser
18
19 Instead of using Bio.AlignAce.Parser.AlignAceParser class, you can use
20 Bio.Motif.parse(handle,format="AlignAce")
21
22 """
23
24 import warnings
25 warnings.warn('Bio.AlignAce is deprecated. Please use Bio.Motif instead.',
26 DeprecationWarning)
27