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A set of generic bits of code under Bio.GFF (DEPRECATED).
This is part of the "old" Bio.GFF module by Michael Hoffman, which offered access to a MySQL database holding GFF data loaded by BioPerl. This code has now been deprecated, and will probably be removed in order to free the Bio.GFF namespace for a new GFF parser in Biopython (including GFF3 support).
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AppendableListDictionary a dictionary of lists |
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ForgivingDictionary | |||
VerboseDict | |||
VerboseList | |||
TempFile | |||
SurrogateNotInitedError | |||
Surrogate the data is stored in _data |
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ArgsParser |
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Returns 1 if x is a tuple or list (sequence types that can nest) Returns 0 otherwise >>> is_nestable("string") 0 >>> is_nestable((0,)) 1 >>> is_nestable(range(5)) 1 |
Run the Bio.GFF.GenericTools module's doctests (PRIVATE). This will try and locate the unit tests directory, and run the doctests from there in order that the relative paths used in the examples work. |
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