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panzer_stk::STK_Interface Class Reference

#include <Panzer_STK_Interface.hpp>

Classes

struct  ElementBlockException
 
class  LocalIdCompare
 
struct  SidesetException
 

Public Types

typedef double ProcIdData
 
typedef stk::mesh::Field< double > SolutionFieldType
 
typedef stk::mesh::Field< double, stk::mesh::Cartesian > VectorFieldType
 
typedef stk::mesh::Field< ProcIdDataProcIdFieldType
 

Public Member Functions

 STK_Interface ()
 
 STK_Interface (unsigned dim)
 
 STK_Interface (Teuchos::RCP< stk::mesh::MetaData > metaData)
 
void addElementBlock (const std::string &name, const CellTopologyData *ctData)
 
void addSideset (const std::string &name, const CellTopologyData *ctData)
 
void addNodeset (const std::string &name)
 
void addSolutionField (const std::string &fieldName, const std::string &blockId)
 
void addCellField (const std::string &fieldName, const std::string &blockId)
 
void addMeshCoordFields (const std::string &blockId, const std::vector< std::string > &coordField, const std::string &dispPrefix)
 
void initialize (stk::ParallelMachine parallelMach, bool setupIO=true)
 
void instantiateBulkData (stk::ParallelMachine parallelMach)
 
void beginModification ()
 
void endModification ()
 
void addNode (stk::mesh::EntityId gid, const std::vector< double > &coord)
 
void addElement (const Teuchos::RCP< ElementDescriptor > &ed, stk::mesh::Part *block)
 
void addEdges ()
 
void addFaces ()
 
void addEntityToSideset (stk::mesh::Entity entity, stk::mesh::Part *sideset)
 
void addEntityToNodeset (stk::mesh::Entity entity, stk::mesh::Part *nodeset)
 
const VectorFieldTypegetCoordinatesField () const
 
const VectorFieldTypegetEdgesField () const
 
const VectorFieldTypegetFacesField () const
 
const double * getNodeCoordinates (stk::mesh::EntityId nodeId) const
 
const double * getNodeCoordinates (stk::mesh::Entity node) const
 
void getSubcellIndices (unsigned entityRank, stk::mesh::EntityId elementId, std::vector< stk::mesh::EntityId > &subcellIds) const
 
void getMyElements (std::vector< stk::mesh::Entity > &elements) const
 
void getMyElements (const std::string &blockID, std::vector< stk::mesh::Entity > &elements) const
 
void getNeighborElements (std::vector< stk::mesh::Entity > &elements) const
 
void getNeighborElements (const std::string &blockID, std::vector< stk::mesh::Entity > &elements) const
 
void getMySides (const std::string &sideName, std::vector< stk::mesh::Entity > &sides) const
 
void getMySides (const std::string &sideName, const std::string &blockName, std::vector< stk::mesh::Entity > &sides) const
 
void getAllSides (const std::string &sideName, std::vector< stk::mesh::Entity > &sides) const
 
void getAllSides (const std::string &sideName, const std::string &blockName, std::vector< stk::mesh::Entity > &sides) const
 
void getMyNodes (const std::string &sideName, const std::string &blockName, std::vector< stk::mesh::Entity > &nodes) const
 
stk::mesh::Entity findConnectivityById (stk::mesh::Entity src, stk::mesh::EntityRank tgt_rank, unsigned rel_id) const
 
void writeToExodus (const std::string &filename)
 
void setupTransientExodusFile (const std::string &filename)
 
void writeToExodus (double timestep)
 
Teuchos::RCP< stk::mesh::BulkData > getBulkData () const
 
Teuchos::RCP< stk::mesh::MetaData > getMetaData () const
 
bool isWritable () const
 
bool isModifiable () const
 
unsigned getDimension () const
 get the dimension More...
 
std::size_t getNumElementBlocks () const
 get the block count More...
 
void getElementBlockNames (std::vector< std::string > &names) const
 
void getSidesetNames (std::vector< std::string > &name) const
 
void getNodesetNames (std::vector< std::string > &name) const
 
stk::mesh::Part * getOwnedPart () const
 Get a pointer to the locally owned part. More...
 
stk::mesh::Part * getElementBlockPart (const std::string &name) const
 get the block count More...
 
std::size_t getNumSidesets () const
 get the side set count More...
 
stk::mesh::Part * getSideset (const std::string &name) const
 
std::size_t getNumNodesets () const
 get the side set count More...
 
stk::mesh::Part * getNodeset (const std::string &name) const
 
std::size_t getEntityCounts (unsigned entityRank) const
 get the global counts for the entity of specified rank More...
 
stk::mesh::EntityId getMaxEntityId (unsigned entityRank) const
 get max entity ID of type entityRank More...
 
void getElementsSharingNode (stk::mesh::EntityId nodeId, std::vector< stk::mesh::Entity > &elements) const
 get a set of elements sharing a single node More...
 
void getNodeIdsForElement (stk::mesh::Entity element, std::vector< stk::mesh::EntityId > &nodeIds) const
 get a list of node ids for nodes connected to an element More...
 
void getOwnedElementsSharingNode (stk::mesh::Entity node, std::vector< stk::mesh::Entity > &elements, std::vector< int > &relIds) const
 
void getOwnedElementsSharingNode (stk::mesh::EntityId nodeId, std::vector< stk::mesh::Entity > &elements, std::vector< int > &relIds, unsigned int matchType) const
 
void getElementsSharingNodes (const std::vector< stk::mesh::EntityId > nodeId, std::vector< stk::mesh::Entity > &elements) const
 get a set of elements sharing multiple nodes More...
 
void buildSubcells ()
 force the mesh to build subcells: edges and faces More...
 
std::size_t elementLocalId (stk::mesh::Entity elmt) const
 
std::size_t elementLocalId (stk::mesh::EntityId gid) const
 
stk::mesh::EntityId elementGlobalId (std::size_t lid) const
 
stk::mesh::EntityId elementGlobalId (stk::mesh::Entity elmt) const
 
unsigned entityOwnerRank (stk::mesh::Entity entity) const
 
bool isValid (stk::mesh::Entity entity) const
 
std::string containingBlockId (stk::mesh::Entity elmt)
 
stk::mesh::Field< double > * getSolutionField (const std::string &fieldName, const std::string &blockId) const
 
stk::mesh::Field< double > * getCellField (const std::string &fieldName, const std::string &blockId) const
 
ProcIdFieldTypegetProcessorIdField ()
 
bool isInitialized () const
 Has initialize been called on this mesh object? More...
 
Teuchos::RCP< const std::vector< stk::mesh::Entity > > getElementsOrderedByLID () const
 
template<typename ArrayT >
void setSolutionFieldData (const std::string &fieldName, const std::string &blockId, const std::vector< std::size_t > &localElementIds, const ArrayT &solutionValues, double scaleValue=1.0)
 
template<typename ArrayT >
void getSolutionFieldData (const std::string &fieldName, const std::string &blockId, const std::vector< std::size_t > &localElementIds, ArrayT &solutionValues) const
 
template<typename ArrayT >
void setCellFieldData (const std::string &fieldName, const std::string &blockId, const std::vector< std::size_t > &localElementIds, const ArrayT &solutionValues, double scaleValue=1.0)
 
template<typename ArrayT >
void getElementVertices (const std::vector< std::size_t > &localIds, ArrayT &vertices) const
 
template<typename ArrayT >
void getElementVertices (const std::vector< stk::mesh::Entity > &elements, ArrayT &vertices) const
 
template<typename ArrayT >
void getElementVertices (const std::vector< std::size_t > &localIds, const std::string &eBlock, ArrayT &vertices) const
 
template<typename ArrayT >
void getElementVertices (const std::vector< stk::mesh::Entity > &elements, const std::string &eBlock, ArrayT &vertices) const
 
template<typename ArrayT >
void getElementVerticesNoResize (const std::vector< std::size_t > &localIds, ArrayT &vertices) const
 
template<typename ArrayT >
void getElementVerticesNoResize (const std::vector< stk::mesh::Entity > &elements, ArrayT &vertices) const
 
template<typename ArrayT >
void getElementVerticesNoResize (const std::vector< std::size_t > &localIds, const std::string &eBlock, ArrayT &vertices) const
 
template<typename ArrayT >
void getElementVerticesNoResize (const std::vector< stk::mesh::Entity > &elements, const std::string &eBlock, ArrayT &vertices) const
 
stk::mesh::EntityRank getElementRank () const
 
stk::mesh::EntityRank getSideRank () const
 
stk::mesh::EntityRank getFaceRank () const
 
stk::mesh::EntityRank getEdgeRank () const
 
stk::mesh::EntityRank getNodeRank () const
 
void initializeFromMetaData ()
 
void buildLocalElementIDs ()
 
const std::vector< Teuchos::RCP< const PeriodicBC_MatcherBase > > & getPeriodicBCVector () const
 
std::vector< Teuchos::RCP< const PeriodicBC_MatcherBase > > & getPeriodicBCVector ()
 
void addPeriodicBC (const Teuchos::RCP< const PeriodicBC_MatcherBase > &bc)
 
void addPeriodicBCs (const std::vector< Teuchos::RCP< const PeriodicBC_MatcherBase > > &bc_vec)
 
std::pair< Teuchos::RCP< std::vector< std::pair< std::size_t, std::size_t > > >, Teuchos::RCP< std::vector< unsigned int > > > getPeriodicNodePairing () const
 
bool validBlockId (const std::string &blockId) const
 
void print (std::ostream &os) const
 
void printMetaData (std::ostream &os) const
 
Teuchos::RCP< const shards::CellTopology > getCellTopology (const std::string &eBlock) const
 
double getCurrentStateTime () const
 
double getInitialStateTime () const
 
void setInitialStateTime (double value)
 
void rebalance (const Teuchos::ParameterList &params)
 
void setBlockWeight (const std::string &blockId, double weight)
 
void setUseFieldCoordinates (bool useFieldCoordinates)
 
bool getUseFieldCoordinates () const
 
void setUseLowerCaseForIO (bool useLowerCase)
 
bool getUseLowerCaseForIO () const
 
template<typename ArrayT >
void getElementVertices_FromField (const std::vector< stk::mesh::Entity > &elements, const std::string &eBlock, ArrayT &vertices) const
 
template<typename ArrayT >
void getElementVertices_FromFieldNoResize (const std::vector< stk::mesh::Entity > &elements, const std::string &eBlock, ArrayT &vertices) const
 
template<typename ArrayT >
void getElementVertices_FromCoords (const std::vector< stk::mesh::Entity > &elements, ArrayT &vertices) const
 
template<typename ArrayT >
void getElementVertices_FromCoordsNoResize (const std::vector< stk::mesh::Entity > &elements, ArrayT &vertices) const
 

Static Public Attributes

static const std::string coordsString = "coordinates"
 
static const std::string nodesString = "nodes"
 
static const std::string edgesString = "edges"
 
static const std::string facesString = "faces"
 

Protected Member Functions

void buildEntityCounts ()
 
void buildMaxEntityIds ()
 
void initializeFieldsInSTK (const std::map< std::pair< std::string, std::string >, SolutionFieldType *> &nameToField, bool setupIO)
 
Teuchos::RCP< Teuchos::MpiComm< int > > getSafeCommunicator (stk::ParallelMachine parallelMach) const
 
void applyElementLoadBalanceWeights ()
 
bool isMeshCoordField (const std::string &eBlock, const std::string &fieldName, int &axis) const
 
template<typename ArrayT >
void setDispFieldData (const std::string &fieldName, const std::string &blockId, int axis, const std::vector< std::size_t > &localElementIds, const ArrayT &solutionValues)
 

Protected Attributes

std::vector< Teuchos::RCP< const PeriodicBC_MatcherBase > > periodicBCs_
 
Teuchos::RCP< stk::mesh::MetaData > metaData_
 
Teuchos::RCP< stk::mesh::BulkData > bulkData_
 
std::map< std::string, stk::mesh::Part * > elementBlocks_
 
std::map< std::string, stk::mesh::Part * > sidesets_
 
std::map< std::string, stk::mesh::Part * > nodesets_
 
std::map< std::string, Teuchos::RCP< shards::CellTopology > > elementBlockCT_
 
stk::mesh::Part * nodesPart_
 
std::vector< stk::mesh::Part * > nodesPartVec_
 
stk::mesh::Part * edgesPart_
 
std::vector< stk::mesh::Part * > edgesPartVec_
 
stk::mesh::Part * facesPart_
 
std::vector< stk::mesh::Part * > facesPartVec_
 
VectorFieldTypecoordinatesField_
 
VectorFieldTypeedgesField_
 
VectorFieldTypefacesField_
 
ProcIdFieldTypeprocessorIdField_
 
SolutionFieldTypeloadBalField_
 
std::map< std::pair< std::string, std::string >, SolutionFieldType * > fieldNameToSolution_
 
std::map< std::pair< std::string, std::string >, SolutionFieldType * > fieldNameToCellField_
 
unsigned dimension_
 
bool initialized_
 
std::vector< std::size_t > entityCounts_
 
std::vector< stk::mesh::EntityId > maxEntityId_
 
unsigned procRank_
 
std::size_t currentLocalId_
 
Teuchos::RCP< Teuchos::MpiComm< int > > mpiComm_
 
double initialStateTime_
 
double currentStateTime_
 
Teuchos::RCP< std::vector< stk::mesh::Entity > > orderedElementVector_
 
std::map< std::string, double > blockWeights_
 
std::unordered_map< stk::mesh::EntityId, std::size_t > localIDHash_
 
std::map< std::string, std::vector< std::string > > meshCoordFields_
 
std::map< std::string, std::vector< std::string > > meshDispFields_
 
bool useFieldCoordinates_
 
bool useLowerCase_
 

Detailed Description

Definition at line 97 of file Panzer_STK_Interface.hpp.

Member Typedef Documentation

◆ ProcIdData

Definition at line 99 of file Panzer_STK_Interface.hpp.

◆ SolutionFieldType

typedef stk::mesh::Field<double> panzer_stk::STK_Interface::SolutionFieldType

Definition at line 100 of file Panzer_STK_Interface.hpp.

◆ VectorFieldType

typedef stk::mesh::Field<double,stk::mesh::Cartesian> panzer_stk::STK_Interface::VectorFieldType

Definition at line 101 of file Panzer_STK_Interface.hpp.

◆ ProcIdFieldType

Definition at line 102 of file Panzer_STK_Interface.hpp.

Constructor & Destructor Documentation

◆ STK_Interface() [1/3]

panzer_stk::STK_Interface::STK_Interface ( )

Definition at line 96 of file Panzer_STK_Interface.cpp.

◆ STK_Interface() [2/3]

panzer_stk::STK_Interface::STK_Interface ( unsigned  dim)

Default constructor

Definition at line 108 of file Panzer_STK_Interface.cpp.

◆ STK_Interface() [3/3]

panzer_stk::STK_Interface::STK_Interface ( Teuchos::RCP< stk::mesh::MetaData >  metaData)

Definition at line 102 of file Panzer_STK_Interface.cpp.

Member Function Documentation

◆ addElementBlock()

void panzer_stk::STK_Interface::addElementBlock ( const std::string &  name,
const CellTopologyData *  ctData 
)

Add an element block with a string name

Definition at line 1017 of file Panzer_STK_Interface.cpp.

◆ addSideset()

void panzer_stk::STK_Interface::addSideset ( const std::string &  name,
const CellTopologyData *  ctData 
)

Add a side set with a string name

Definition at line 119 of file Panzer_STK_Interface.cpp.

◆ addNodeset()

void panzer_stk::STK_Interface::addNodeset ( const std::string &  name)

Add a node set with a string name

Definition at line 131 of file Panzer_STK_Interface.cpp.

◆ addSolutionField()

void panzer_stk::STK_Interface::addSolutionField ( const std::string &  fieldName,
const std::string &  blockId 
)

Add a solution field

Definition at line 145 of file Panzer_STK_Interface.cpp.

◆ addCellField()

void panzer_stk::STK_Interface::addCellField ( const std::string &  fieldName,
const std::string &  blockId 
)

Add a solution field

Definition at line 161 of file Panzer_STK_Interface.cpp.

◆ addMeshCoordFields()

void panzer_stk::STK_Interface::addMeshCoordFields ( const std::string &  blockId,
const std::vector< std::string > &  coordField,
const std::string &  dispPrefix 
)

Add a solution field for coordinates with a particular prefix, force it to be outputed as a to be mesh displacement field. This is really only relevant for I/O and how the field is stored internally in the mesh.

Parameters
[in]blockIdElement block to use
[in]coordPrefixPrefix for solution coordinate field (assumes using "X","Y","Z" as postfix)
[in]dispPrefixPrefix for displacment (output) field

Definition at line 177 of file Panzer_STK_Interface.cpp.

◆ initialize()

void panzer_stk::STK_Interface::initialize ( stk::ParallelMachine  parallelMach,
bool  setupIO = true 
)

Initialize the mesh with the current dimension This also calls commit on the meta data causing it to be frozen. Information about elements blocks has to be commited before this. If parallel machine has already been specified through instantiateBulkData that communicator is used. Otherwise a new copy is constructed and will be used through out this mesh object's lifetime.

Definition at line 221 of file Panzer_STK_Interface.cpp.

◆ instantiateBulkData()

void panzer_stk::STK_Interface::instantiateBulkData ( stk::ParallelMachine  parallelMach)

Build a bulk data object but don't do anything with it. If parallel machine has already been specified through initialize that communicator is used. Otherwise a new copy is constructed and will be used by default throughout the lifetime of this object.

Definition at line 315 of file Panzer_STK_Interface.cpp.

◆ beginModification()

void panzer_stk::STK_Interface::beginModification ( )

Put the bulk data manager in modification mode.

Definition at line 324 of file Panzer_STK_Interface.cpp.

◆ endModification()

void panzer_stk::STK_Interface::endModification ( )

Take the bulk data manager out of modification mode.

Definition at line 332 of file Panzer_STK_Interface.cpp.

◆ addNode()

void panzer_stk::STK_Interface::addNode ( stk::mesh::EntityId  gid,
const std::vector< double > &  coord 
)

Add a node to the mesh with a specific set of coordinates to the mesh.

Precondition
coord.size()==getDimension()
isModifiable()==true

Definition at line 388 of file Panzer_STK_Interface.cpp.

◆ addElement()

void panzer_stk::STK_Interface::addElement ( const Teuchos::RCP< ElementDescriptor > &  ed,
stk::mesh::Part *  block 
)

Definition at line 422 of file Panzer_STK_Interface.cpp.

◆ addEdges()

void panzer_stk::STK_Interface::addEdges ( )

Definition at line 445 of file Panzer_STK_Interface.cpp.

◆ addFaces()

void panzer_stk::STK_Interface::addFaces ( )

Definition at line 473 of file Panzer_STK_Interface.cpp.

◆ addEntityToSideset()

void panzer_stk::STK_Interface::addEntityToSideset ( stk::mesh::Entity  entity,
stk::mesh::Part *  sideset 
)

Addes an entity to a specified side set.

Definition at line 406 of file Panzer_STK_Interface.cpp.

◆ addEntityToNodeset()

void panzer_stk::STK_Interface::addEntityToNodeset ( stk::mesh::Entity  entity,
stk::mesh::Part *  nodeset 
)

Addes an entity to a specified node set.

Definition at line 414 of file Panzer_STK_Interface.cpp.

◆ getCoordinatesField()

const VectorFieldType& panzer_stk::STK_Interface::getCoordinatesField ( ) const
inline

Grab the coordinates field

Definition at line 209 of file Panzer_STK_Interface.hpp.

◆ getEdgesField()

const VectorFieldType& panzer_stk::STK_Interface::getEdgesField ( ) const
inline

Grab the edges field

Definition at line 214 of file Panzer_STK_Interface.hpp.

◆ getFacesField()

const VectorFieldType& panzer_stk::STK_Interface::getFacesField ( ) const
inline

Definition at line 217 of file Panzer_STK_Interface.hpp.

◆ getNodeCoordinates() [1/2]

const double * panzer_stk::STK_Interface::getNodeCoordinates ( stk::mesh::EntityId  nodeId) const

Look up a global node and get the coordinate.

Definition at line 757 of file Panzer_STK_Interface.cpp.

◆ getNodeCoordinates() [2/2]

const double * panzer_stk::STK_Interface::getNodeCoordinates ( stk::mesh::Entity  node) const

Look up a global node and get the coordinate.

Definition at line 763 of file Panzer_STK_Interface.cpp.

◆ getSubcellIndices()

void panzer_stk::STK_Interface::getSubcellIndices ( unsigned  entityRank,
stk::mesh::EntityId  elementId,
std::vector< stk::mesh::EntityId > &  subcellIds 
) const

Get subcell global IDs

Definition at line 768 of file Panzer_STK_Interface.cpp.

◆ getMyElements() [1/2]

void panzer_stk::STK_Interface::getMyElements ( std::vector< stk::mesh::Entity > &  elements) const

Get a vector of elements owned by this processor

Definition at line 789 of file Panzer_STK_Interface.cpp.

◆ getMyElements() [2/2]

void panzer_stk::STK_Interface::getMyElements ( const std::string &  blockID,
std::vector< stk::mesh::Entity > &  elements 
) const

Get a vector of elements owned by this processor on a particular block ID

Definition at line 799 of file Panzer_STK_Interface.cpp.

◆ getNeighborElements() [1/2]

void panzer_stk::STK_Interface::getNeighborElements ( std::vector< stk::mesh::Entity > &  elements) const

Get a vector of elements that share an edge/face with an owned element. Note that these elements are not owned.

Definition at line 814 of file Panzer_STK_Interface.cpp.

◆ getNeighborElements() [2/2]

void panzer_stk::STK_Interface::getNeighborElements ( const std::string &  blockID,
std::vector< stk::mesh::Entity > &  elements 
) const

Get a vector of elements not owned by this processor but in a particular block

Definition at line 824 of file Panzer_STK_Interface.cpp.

◆ getMySides() [1/2]

void panzer_stk::STK_Interface::getMySides ( const std::string &  sideName,
std::vector< stk::mesh::Entity > &  sides 
) const

Get Entities corresponding to the side set requested. The Entites in the vector should be a dimension lower then getDimension().

Parameters
[in]sideNameName of side set
[in,out]sidesVector of entities containing the requested sides.

Definition at line 838 of file Panzer_STK_Interface.cpp.

◆ getMySides() [2/2]

void panzer_stk::STK_Interface::getMySides ( const std::string &  sideName,
const std::string &  blockName,
std::vector< stk::mesh::Entity > &  sides 
) const

Get Entities corresponding to the locally owned part of the side set requested. This also limits the entities to be in a particular element block. The Entites in the vector should be a dimension lower then getDimension().

Parameters
[in]sideNameName of side set
[in]blockNameName of block
[in,out]sidesVector of entities containing the requested sides.

Definition at line 851 of file Panzer_STK_Interface.cpp.

◆ getAllSides() [1/2]

void panzer_stk::STK_Interface::getAllSides ( const std::string &  sideName,
std::vector< stk::mesh::Entity > &  sides 
) const

Get Entities corresponding to the locally owned part of the side set requested. The Entites in the vector should be a dimension lower then getDimension().

Parameters
[in]sideNameName of side set
[in,out]sidesVector of entities containing the requested sides.

Definition at line 868 of file Panzer_STK_Interface.cpp.

◆ getAllSides() [2/2]

void panzer_stk::STK_Interface::getAllSides ( const std::string &  sideName,
const std::string &  blockName,
std::vector< stk::mesh::Entity > &  sides 
) const

Get Entities corresponding to the side set requested. This also limits the entities to be in a particular element block. The Entites in the vector should be a dimension lower then getDimension().

Parameters
[in]sideNameName of side set
[in]blockNameName of block
[in,out]sidesVector of entities containing the requested sides.

Definition at line 880 of file Panzer_STK_Interface.cpp.

◆ getMyNodes()

void panzer_stk::STK_Interface::getMyNodes ( const std::string &  sideName,
const std::string &  blockName,
std::vector< stk::mesh::Entity > &  nodes 
) const

Get Entities corresponding to the node set requested. This also limits the entities to be in a particular element block. The Entites in the vector should be ofdimension 0.

Parameters
[in]nodesetNameName of side set
[in]blockNameName of block
[in,out]sidesVector of entities containing the requested sides.

Definition at line 897 of file Panzer_STK_Interface.cpp.

◆ findConnectivityById()

stk::mesh::Entity panzer_stk::STK_Interface::findConnectivityById ( stk::mesh::Entity  src,
stk::mesh::EntityRank  tgt_rank,
unsigned  rel_id 
) const

Searches for connected entity by rank and relation id. Returns invalid entity on failure.

Parameters
[in]srcThe handle to the source entity (the 'from' part of the relation)
[in]tgt_rankThe entity rank of relations to search
[in]rel_idThe id of the relation to search for

Definition at line 528 of file Panzer_STK_Interface.cpp.

◆ writeToExodus() [1/2]

void panzer_stk::STK_Interface::writeToExodus ( const std::string &  filename)

Write this mesh to exodus. This is a one shot function that will write to a particular exodus output file.

Definition at line 503 of file Panzer_STK_Interface.cpp.

◆ setupTransientExodusFile()

void panzer_stk::STK_Interface::setupTransientExodusFile ( const std::string &  filename)

This simply sets up a transient exodus file for writing. No work is performed at this stage. This is used in combination with writeToExodus(double timestep).

Definition at line 542 of file Panzer_STK_Interface.cpp.

◆ writeToExodus() [2/2]

void panzer_stk::STK_Interface::writeToExodus ( double  timestep)

Write this timestep to the exodus file specified in the setupTransientExodusFile. This uses the current state of the STK fields as the time step.

Definition at line 565 of file Panzer_STK_Interface.cpp.

◆ getBulkData()

Teuchos::RCP<stk::mesh::BulkData> panzer_stk::STK_Interface::getBulkData ( ) const
inline

Definition at line 333 of file Panzer_STK_Interface.hpp.

◆ getMetaData()

Teuchos::RCP<stk::mesh::MetaData> panzer_stk::STK_Interface::getMetaData ( ) const
inline

Definition at line 334 of file Panzer_STK_Interface.hpp.

◆ isWritable()

bool panzer_stk::STK_Interface::isWritable ( ) const

Definition at line 584 of file Panzer_STK_Interface.cpp.

◆ isModifiable()

bool panzer_stk::STK_Interface::isModifiable ( ) const
inline

Definition at line 338 of file Panzer_STK_Interface.hpp.

◆ getDimension()

unsigned panzer_stk::STK_Interface::getDimension ( ) const
inline

get the dimension

Definition at line 343 of file Panzer_STK_Interface.hpp.

◆ getNumElementBlocks()

std::size_t panzer_stk::STK_Interface::getNumElementBlocks ( ) const
inline

get the block count

Definition at line 347 of file Panzer_STK_Interface.hpp.

◆ getElementBlockNames()

void panzer_stk::STK_Interface::getElementBlockNames ( std::vector< std::string > &  names) const

Get a vector containing the names of the element blocks. This function always returns the current set of element blocks in lexiographic order (uses the sorting built into the std::map). This method can only be called after initialize.

Parameters
[in,out]namesVector of names of the element blocks.

Definition at line 914 of file Panzer_STK_Interface.cpp.

◆ getSidesetNames()

void panzer_stk::STK_Interface::getSidesetNames ( std::vector< std::string > &  name) const

Get a vector containing the names of the side sets. This function always returns the current set of side sets in lexiographic order (uses the sorting built into the std::map). This method can only be called after initialize.

Parameters
[in,out]namesVector of names of the side sets

Definition at line 926 of file Panzer_STK_Interface.cpp.

◆ getNodesetNames()

void panzer_stk::STK_Interface::getNodesetNames ( std::vector< std::string > &  name) const

Get a vector containing the names of the node sets. This function always returns the current set of node sets in lexiographic order (uses the sorting built into the std::map). This method can only be called after initialize.

Parameters
[in,out]namesVector of names of the element blocks.

Definition at line 938 of file Panzer_STK_Interface.cpp.

◆ getOwnedPart()

stk::mesh::Part* panzer_stk::STK_Interface::getOwnedPart ( ) const
inline

Get a pointer to the locally owned part.

Definition at line 378 of file Panzer_STK_Interface.hpp.

◆ getElementBlockPart()

stk::mesh::Part* panzer_stk::STK_Interface::getElementBlockPart ( const std::string &  name) const
inline

get the block count

Definition at line 382 of file Panzer_STK_Interface.hpp.

◆ getNumSidesets()

std::size_t panzer_stk::STK_Interface::getNumSidesets ( ) const
inline

get the side set count

Definition at line 390 of file Panzer_STK_Interface.hpp.

◆ getSideset()

stk::mesh::Part* panzer_stk::STK_Interface::getSideset ( const std::string &  name) const
inline

Definition at line 393 of file Panzer_STK_Interface.hpp.

◆ getNumNodesets()

std::size_t panzer_stk::STK_Interface::getNumNodesets ( ) const
inline

get the side set count

Definition at line 397 of file Panzer_STK_Interface.hpp.

◆ getNodeset()

stk::mesh::Part* panzer_stk::STK_Interface::getNodeset ( const std::string &  name) const
inline

Definition at line 400 of file Panzer_STK_Interface.hpp.

◆ getEntityCounts()

std::size_t panzer_stk::STK_Interface::getEntityCounts ( unsigned  entityRank) const

get the global counts for the entity of specified rank

Definition at line 728 of file Panzer_STK_Interface.cpp.

◆ getMaxEntityId()

stk::mesh::EntityId panzer_stk::STK_Interface::getMaxEntityId ( unsigned  entityRank) const

get max entity ID of type entityRank

Definition at line 736 of file Panzer_STK_Interface.cpp.

◆ getElementsSharingNode()

void panzer_stk::STK_Interface::getElementsSharingNode ( stk::mesh::EntityId  nodeId,
std::vector< stk::mesh::Entity > &  elements 
) const

get a set of elements sharing a single node

Definition at line 593 of file Panzer_STK_Interface.cpp.

◆ getNodeIdsForElement()

void panzer_stk::STK_Interface::getNodeIdsForElement ( stk::mesh::Entity  element,
std::vector< stk::mesh::EntityId > &  nodeIds 
) const

get a list of node ids for nodes connected to an element

Definition at line 676 of file Panzer_STK_Interface.cpp.

◆ getOwnedElementsSharingNode() [1/2]

void panzer_stk::STK_Interface::getOwnedElementsSharingNode ( stk::mesh::Entity  node,
std::vector< stk::mesh::Entity > &  elements,
std::vector< int > &  relIds 
) const

Get set of element sharing a single node and its local node id.

Definition at line 606 of file Panzer_STK_Interface.cpp.

◆ getOwnedElementsSharingNode() [2/2]

void panzer_stk::STK_Interface::getOwnedElementsSharingNode ( stk::mesh::EntityId  nodeId,
std::vector< stk::mesh::Entity > &  elements,
std::vector< int > &  relIds,
unsigned int  matchType 
) const

Get set of element sharing a single node and its local node id.

Definition at line 626 of file Panzer_STK_Interface.cpp.

◆ getElementsSharingNodes()

void panzer_stk::STK_Interface::getElementsSharingNodes ( const std::vector< stk::mesh::EntityId >  nodeId,
std::vector< stk::mesh::Entity > &  elements 
) const

get a set of elements sharing multiple nodes

Definition at line 644 of file Panzer_STK_Interface.cpp.

◆ buildSubcells()

void panzer_stk::STK_Interface::buildSubcells ( )

force the mesh to build subcells: edges and faces

Definition at line 744 of file Panzer_STK_Interface.cpp.

◆ elementLocalId() [1/2]

std::size_t panzer_stk::STK_Interface::elementLocalId ( stk::mesh::Entity  elmt) const

Get an elements local index

Definition at line 948 of file Panzer_STK_Interface.cpp.

◆ elementLocalId() [2/2]

std::size_t panzer_stk::STK_Interface::elementLocalId ( stk::mesh::EntityId  gid) const

Get an elements local index

Definition at line 955 of file Panzer_STK_Interface.cpp.

◆ elementGlobalId() [1/2]

stk::mesh::EntityId panzer_stk::STK_Interface::elementGlobalId ( std::size_t  lid) const
inline

Get an elements global index

Definition at line 445 of file Panzer_STK_Interface.hpp.

◆ elementGlobalId() [2/2]

stk::mesh::EntityId panzer_stk::STK_Interface::elementGlobalId ( stk::mesh::Entity  elmt) const
inline

Get an elements global index

Definition at line 450 of file Panzer_STK_Interface.hpp.

◆ entityOwnerRank()

unsigned panzer_stk::STK_Interface::entityOwnerRank ( stk::mesh::Entity  entity) const
inline

Get an Entity's parallel owner (process rank)

Definition at line 455 of file Panzer_STK_Interface.hpp.

◆ isValid()

bool panzer_stk::STK_Interface::isValid ( stk::mesh::Entity  entity) const
inline

Check if entity handle is valid

Definition at line 460 of file Panzer_STK_Interface.hpp.

◆ containingBlockId()

std::string panzer_stk::STK_Interface::containingBlockId ( stk::mesh::Entity  elmt)

Get the containing block ID of this element.

Definition at line 967 of file Panzer_STK_Interface.cpp.

◆ getSolutionField()

stk::mesh::Field< double > * panzer_stk::STK_Interface::getSolutionField ( const std::string &  fieldName,
const std::string &  blockId 
) const

Get the stk mesh field pointer associated with a particular solution value Assumes there is a field associated with "fieldName,blockId" pair. If none is found an exception (std::runtime_error) is raised.

Definition at line 976 of file Panzer_STK_Interface.cpp.

◆ getCellField()

stk::mesh::Field< double > * panzer_stk::STK_Interface::getCellField ( const std::string &  fieldName,
const std::string &  blockId 
) const

Get the stk mesh field pointer associated with a particular value Assumes there is a field associated with "fieldName,blockId" pair. If none is found an exception (std::runtime_error) is raised.

Definition at line 990 of file Panzer_STK_Interface.cpp.

◆ getProcessorIdField()

ProcIdFieldType* panzer_stk::STK_Interface::getProcessorIdField ( )
inline

Definition at line 481 of file Panzer_STK_Interface.hpp.

◆ isInitialized()

bool panzer_stk::STK_Interface::isInitialized ( ) const
inline

Has initialize been called on this mesh object?

Definition at line 484 of file Panzer_STK_Interface.hpp.

◆ getElementsOrderedByLID()

Teuchos::RCP< const std::vector< stk::mesh::Entity > > panzer_stk::STK_Interface::getElementsOrderedByLID ( ) const

Get Vector of element entities ordered by their LID, returns an RCP so that it is easily stored by the caller.

Definition at line 1004 of file Panzer_STK_Interface.cpp.

◆ setSolutionFieldData()

template<typename ArrayT >
void panzer_stk::STK_Interface::setSolutionFieldData ( const std::string &  fieldName,
const std::string &  blockId,
const std::vector< std::size_t > &  localElementIds,
const ArrayT &  solutionValues,
double  scaleValue = 1.0 
)

Writes a particular field to an array. Notice this is setup to work with the worksets associated with Panzer.

Parameters
[in]fieldNameName of field to be filled
[in]blockIdName of block this set of elements belongs to
[in]localElementIdsLocal element IDs for this set of solution values
[in]solutionValuesAn two dimensional array object sized by (Cells,Basis Count)
Note
The block ID is not strictly needed in this context. However forcing the user to provide it does permit an additional level of safety. The implicit assumption is that the elements being "set" are part of the specified block. This prevents the need to perform a null pointer check on the field data, because the STK_Interface construction of the fields should force it to be nonnull...

Definition at line 928 of file Panzer_STK_Interface.hpp.

◆ getSolutionFieldData()

template<typename ArrayT >
void panzer_stk::STK_Interface::getSolutionFieldData ( const std::string &  fieldName,
const std::string &  blockId,
const std::vector< std::size_t > &  localElementIds,
ArrayT &  solutionValues 
) const

Reads a particular field into an array. Notice this is setup to work with the worksets associated with Panzer.

Parameters
[in]fieldNameName of field to be filled
[in]blockIdName of block this set of elements belongs to
[in]localElementIdsLocal element IDs for this set of solution values
[in]solutionValuesAn two dimensional array object sized by (Cells,Basis Count)
Note
The block ID is not strictly needed in this context. However forcing the user to provide it does permit an additional level of safety. The implicit assumption is that the elements being retrieved are part of the specified block. This prevents the need to perform a null pointer check on the field data, because the STK_Interface construction of the fields should force it to be nonnull...

Definition at line 988 of file Panzer_STK_Interface.hpp.

◆ setCellFieldData()

template<typename ArrayT >
void panzer_stk::STK_Interface::setCellFieldData ( const std::string &  fieldName,
const std::string &  blockId,
const std::vector< std::size_t > &  localElementIds,
const ArrayT &  solutionValues,
double  scaleValue = 1.0 
)

Writes a particular field to a cell array. Notice this is setup to work with the worksets associated with Panzer.

Parameters
[in]fieldNameName of field to be filled
[in]blockIdName of block this set of elements belongs to
[in]localElementIdsLocal element IDs for this set of solution values
[in]solutionValuesA one dimensional array object sized by (Cells)
Note
The block ID is not strictly needed in this context. However forcing the user to provide it does permit an additional level of safety. The implicit assumption is that the elements being "set" are part of the specified block. This prevents the need to perform a null pointer check on the field data, because the STK_Interface construction of the fields should force it to be nonnull...

Definition at line 1018 of file Panzer_STK_Interface.hpp.

◆ getElementVertices() [1/4]

template<typename ArrayT >
void panzer_stk::STK_Interface::getElementVertices ( const std::vector< std::size_t > &  localIds,
ArrayT &  vertices 
) const

Get vertices associated with a number of elements of the same geometry.

Parameters
[in]localIdsElement local IDs to construct vertices
[out]verticesOutput array that will be sized (localIds.size(),#Vertices,#Dim)
Note
If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1036 of file Panzer_STK_Interface.hpp.

◆ getElementVertices() [2/4]

template<typename ArrayT >
void panzer_stk::STK_Interface::getElementVertices ( const std::vector< stk::mesh::Entity > &  elements,
ArrayT &  vertices 
) const

Get vertices associated with a number of elements of the same geometry.

Parameters
[in]elementsElement entities to construct vertices
[out]verticesOutput array that will be sized (localIds.size(),#Vertices,#Dim)
Note
If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1060 of file Panzer_STK_Interface.hpp.

◆ getElementVertices() [3/4]

template<typename ArrayT >
void panzer_stk::STK_Interface::getElementVertices ( const std::vector< std::size_t > &  localIds,
const std::string &  eBlock,
ArrayT &  vertices 
) const

Get vertices associated with a number of elements of the same geometry.

Parameters
[in]localIdsElement local IDs to construct vertices
[in]eBlockElement block the elements are in
[out]verticesOutput array that will be sized (localIds.size(),#Vertices,#Dim)
Note
If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1084 of file Panzer_STK_Interface.hpp.

◆ getElementVertices() [4/4]

template<typename ArrayT >
void panzer_stk::STK_Interface::getElementVertices ( const std::vector< stk::mesh::Entity > &  elements,
const std::string &  eBlock,
ArrayT &  vertices 
) const

Get vertices associated with a number of elements of the same geometry.

Parameters
[in]elementsElement entities to construct vertices
[in]eBlockElement block the elements are in
[out]verticesOutput array that will be sized (localIds.size(),#Vertices,#Dim)
Note
If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1073 of file Panzer_STK_Interface.hpp.

◆ getElementVerticesNoResize() [1/4]

template<typename ArrayT >
void panzer_stk::STK_Interface::getElementVerticesNoResize ( const std::vector< std::size_t > &  localIds,
ArrayT &  vertices 
) const

Get vertices associated with a number of elements of the same geometry. The vertex array will not be resized.

Parameters
[in]localIdsElement local IDs to construct vertices
[out]verticesOutput array that will be sized (localIds.size(),#Vertices,#Dim)
Note
If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1102 of file Panzer_STK_Interface.hpp.

◆ getElementVerticesNoResize() [2/4]

template<typename ArrayT >
void panzer_stk::STK_Interface::getElementVerticesNoResize ( const std::vector< stk::mesh::Entity > &  elements,
ArrayT &  vertices 
) const

Get vertices associated with a number of elements of the same geometry. The vertex array will not be resized.

Parameters
[in]elementsElement entities to construct vertices
[out]verticesOutput array that will be sized (localIds.size(),#Vertices,#Dim)
Note
If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1126 of file Panzer_STK_Interface.hpp.

◆ getElementVerticesNoResize() [3/4]

template<typename ArrayT >
void panzer_stk::STK_Interface::getElementVerticesNoResize ( const std::vector< std::size_t > &  localIds,
const std::string &  eBlock,
ArrayT &  vertices 
) const

Get vertices associated with a number of elements of the same geometry. The vertex array will not be resized.

Parameters
[in]localIdsElement local IDs to construct vertices
[in]eBlockElement block the elements are in
[out]verticesOutput array that will be sized (localIds.size(),#Vertices,#Dim)
Note
If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1150 of file Panzer_STK_Interface.hpp.

◆ getElementVerticesNoResize() [4/4]

template<typename ArrayT >
void panzer_stk::STK_Interface::getElementVerticesNoResize ( const std::vector< stk::mesh::Entity > &  elements,
const std::string &  eBlock,
ArrayT &  vertices 
) const

Get vertices associated with a number of elements of the same geometry. The vertex array will not be resized.

Parameters
[in]elementsElement entities to construct vertices
[in]eBlockElement block the elements are in
[out]verticesOutput array that will be sized (localIds.size(),#Vertices,#Dim)
Note
If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1139 of file Panzer_STK_Interface.hpp.

◆ getElementRank()

stk::mesh::EntityRank panzer_stk::STK_Interface::getElementRank ( ) const
inline

Definition at line 640 of file Panzer_STK_Interface.hpp.

◆ getSideRank()

stk::mesh::EntityRank panzer_stk::STK_Interface::getSideRank ( ) const
inline

Definition at line 641 of file Panzer_STK_Interface.hpp.

◆ getFaceRank()

stk::mesh::EntityRank panzer_stk::STK_Interface::getFaceRank ( ) const
inline

Definition at line 642 of file Panzer_STK_Interface.hpp.

◆ getEdgeRank()

stk::mesh::EntityRank panzer_stk::STK_Interface::getEdgeRank ( ) const
inline

Definition at line 643 of file Panzer_STK_Interface.hpp.

◆ getNodeRank()

stk::mesh::EntityRank panzer_stk::STK_Interface::getNodeRank ( ) const
inline

Definition at line 644 of file Panzer_STK_Interface.hpp.

◆ initializeFromMetaData()

void panzer_stk::STK_Interface::initializeFromMetaData ( )

Build fields and parts from the meta data

Definition at line 1035 of file Panzer_STK_Interface.cpp.

◆ buildLocalElementIDs()

void panzer_stk::STK_Interface::buildLocalElementIDs ( )

Setup local element IDs

Definition at line 1059 of file Panzer_STK_Interface.cpp.

◆ getPeriodicBCVector() [1/2]

const std::vector<Teuchos::RCP<const PeriodicBC_MatcherBase> >& panzer_stk::STK_Interface::getPeriodicBCVector ( ) const
inline

Return a vector containing all the periodic boundary conditions.

Definition at line 657 of file Panzer_STK_Interface.hpp.

◆ getPeriodicBCVector() [2/2]

std::vector<Teuchos::RCP<const PeriodicBC_MatcherBase> >& panzer_stk::STK_Interface::getPeriodicBCVector ( )
inline

Return a vector containing all the periodic boundary conditions.

Definition at line 663 of file Panzer_STK_Interface.hpp.

◆ addPeriodicBC()

void panzer_stk::STK_Interface::addPeriodicBC ( const Teuchos::RCP< const PeriodicBC_MatcherBase > &  bc)
inline

Add a periodic boundary condition.

Note
This does not actually change the underlying mesh. The object itself only communciates the matched IDs (currently nodes)

Definition at line 671 of file Panzer_STK_Interface.hpp.

◆ addPeriodicBCs()

void panzer_stk::STK_Interface::addPeriodicBCs ( const std::vector< Teuchos::RCP< const PeriodicBC_MatcherBase > > &  bc_vec)
inline

Add a set of periodic boundary conditions.

Note
This does not actually change the underlying mesh. The object itself only communciates the matched IDs (currently nodes)

Definition at line 679 of file Panzer_STK_Interface.hpp.

◆ getPeriodicNodePairing()

std::pair< Teuchos::RCP< std::vector< std::pair< std::size_t, std::size_t > > >, Teuchos::RCP< std::vector< unsigned int > > > panzer_stk::STK_Interface::getPeriodicNodePairing ( ) const

Definition at line 1146 of file Panzer_STK_Interface.cpp.

◆ validBlockId()

bool panzer_stk::STK_Interface::validBlockId ( const std::string &  blockId) const

check for a valid block id

Definition at line 1170 of file Panzer_STK_Interface.cpp.

◆ print()

void panzer_stk::STK_Interface::print ( std::ostream &  os) const

Print a brief description of the STK mesh to a stream.

Definition at line 1177 of file Panzer_STK_Interface.cpp.

◆ printMetaData()

void panzer_stk::STK_Interface::printMetaData ( std::ostream &  os) const

Print a brief description of the STK mesh to a stream.

Definition at line 1227 of file Panzer_STK_Interface.cpp.

◆ getCellTopology()

Teuchos::RCP< const shards::CellTopology > panzer_stk::STK_Interface::getCellTopology ( const std::string &  eBlock) const

Get the cell topology from the element block.

Definition at line 1267 of file Panzer_STK_Interface.cpp.

◆ getCurrentStateTime()

double panzer_stk::STK_Interface::getCurrentStateTime ( ) const
inline

Get the value of the time-stamp the last time this object was written to Exodus (default 0.0)

Note
The initial state time is completely disconnected from the current state time

Definition at line 705 of file Panzer_STK_Interface.hpp.

◆ getInitialStateTime()

double panzer_stk::STK_Interface::getInitialStateTime ( ) const
inline

Get the value of the time-stamp when this object was created (default 0.0) or when setInitialStateTime was called.

Note
The initial state time is completely disconnected from the current state time

Definition at line 712 of file Panzer_STK_Interface.hpp.

◆ setInitialStateTime()

void panzer_stk::STK_Interface::setInitialStateTime ( double  value)
inline

Set the value of the initial time-stamp

Note
The initial state time is completely disconnected from the current state time

Definition at line 718 of file Panzer_STK_Interface.hpp.

◆ rebalance()

void panzer_stk::STK_Interface::rebalance ( const Teuchos::ParameterList params)

Rebalance using zoltan. Note that this will void the local element ids.

Definition at line 1294 of file Panzer_STK_Interface.cpp.

◆ setBlockWeight()

void panzer_stk::STK_Interface::setBlockWeight ( const std::string &  blockId,
double  weight 
)
inline

Set the weight for a particular element block. Larger means more costly to assemble and evaluate.

Definition at line 727 of file Panzer_STK_Interface.hpp.

◆ setUseFieldCoordinates()

void panzer_stk::STK_Interface::setUseFieldCoordinates ( bool  useFieldCoordinates)
inline

When coordinates are returned in the getElementVertices method, extract coordinates using a specified field (not the intrinsic coordinates) where available (where unavailable the intrinsic coordinates are used. Note that this does not change the behavior of getNodeCoordinates. This is set to false by default.

Definition at line 736 of file Panzer_STK_Interface.hpp.

◆ getUseFieldCoordinates()

bool panzer_stk::STK_Interface::getUseFieldCoordinates ( ) const
inline

Return the use field coordinates flag

Definition at line 740 of file Panzer_STK_Interface.hpp.

◆ setUseLowerCaseForIO()

void panzer_stk::STK_Interface::setUseLowerCaseForIO ( bool  useLowerCase)
inline

Use lower case (or not) for I/O

Definition at line 744 of file Panzer_STK_Interface.hpp.

◆ getUseLowerCaseForIO()

bool panzer_stk::STK_Interface::getUseLowerCaseForIO ( ) const
inline

Use lower case (or not) for I/O

Definition at line 748 of file Panzer_STK_Interface.hpp.

◆ getElementVertices_FromField()

template<typename ArrayT >
void panzer_stk::STK_Interface::getElementVertices_FromField ( const std::vector< stk::mesh::Entity > &  elements,
const std::string &  eBlock,
ArrayT &  vertices 
) const

Get vertices associated with a number of elements of the same geometry, note that a coordinate field will be used (if not is available an exception will be thrown).

Parameters
[in]elementsElement entities to construct vertices
[in]eBlockElement block the elements are in
[out]verticesOutput array that will be sized (localIds.size(),#Vertices,#Dim)
Note
If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1260 of file Panzer_STK_Interface.hpp.

◆ getElementVertices_FromFieldNoResize()

template<typename ArrayT >
void panzer_stk::STK_Interface::getElementVertices_FromFieldNoResize ( const std::vector< stk::mesh::Entity > &  elements,
const std::string &  eBlock,
ArrayT &  vertices 
) const

Definition at line 1312 of file Panzer_STK_Interface.hpp.

◆ getElementVertices_FromCoords()

template<typename ArrayT >
void panzer_stk::STK_Interface::getElementVertices_FromCoords ( const std::vector< stk::mesh::Entity > &  elements,
ArrayT &  vertices 
) const

Get vertices associated with a number of elements of the same geometry. This access the true mesh coordinates array.

Parameters
[in]elementsElement entities to construct vertices
[out]verticesOutput array that will be sized (localIds.size(),#Vertices,#Dim)
Note
If not all elements have the same number of vertices an exception is thrown. If the size of localIds is 0, the function will silently return

Definition at line 1168 of file Panzer_STK_Interface.hpp.

◆ getElementVertices_FromCoordsNoResize()

template<typename ArrayT >
void panzer_stk::STK_Interface::getElementVertices_FromCoordsNoResize ( const std::vector< stk::mesh::Entity > &  elements,
ArrayT &  vertices 
) const

Definition at line 1216 of file Panzer_STK_Interface.hpp.

◆ buildEntityCounts()

void panzer_stk::STK_Interface::buildEntityCounts ( )
protected

Compute global entity counts.

Definition at line 687 of file Panzer_STK_Interface.cpp.

◆ buildMaxEntityIds()

void panzer_stk::STK_Interface::buildMaxEntityIds ( )
protected

Compute global entity counts.

Definition at line 693 of file Panzer_STK_Interface.cpp.

◆ initializeFieldsInSTK()

void panzer_stk::STK_Interface::initializeFieldsInSTK ( const std::map< std::pair< std::string, std::string >, SolutionFieldType *> &  nameToField,
bool  setupIO 
)
protected

Initialize STK fields using a map (allocate space for storage and writing) to a specific entity rank.

Definition at line 291 of file Panzer_STK_Interface.cpp.

◆ getSafeCommunicator()

Teuchos::RCP< Teuchos::MpiComm< int > > panzer_stk::STK_Interface::getSafeCommunicator ( stk::ParallelMachine  parallelMach) const
protected

Build a safely handled Teuchos MPI communicator from a parallel machine. This object asserts ownership of the communicator so that we can gurantee existence so the outer user can do whatever they'd like with the original.

Definition at line 1283 of file Panzer_STK_Interface.cpp.

◆ applyElementLoadBalanceWeights()

void panzer_stk::STK_Interface::applyElementLoadBalanceWeights ( )
protected

In a pure local operation apply the user specified block weights for each element block to the field that defines the load balance weighting. This uses the blockWeights_ member to determine the user value that has been set for a particular element block.

Definition at line 1102 of file Panzer_STK_Interface.cpp.

◆ isMeshCoordField()

bool panzer_stk::STK_Interface::isMeshCoordField ( const std::string &  eBlock,
const std::string &  fieldName,
int &  axis 
) const
protected

Determine if a particular field in an element block is a displacement field. Return the displacement field name in the requested argument if so.

Definition at line 1124 of file Panzer_STK_Interface.cpp.

◆ setDispFieldData()

template<typename ArrayT >
void panzer_stk::STK_Interface::setDispFieldData ( const std::string &  fieldName,
const std::string &  blockId,
int  axis,
const std::vector< std::size_t > &  localElementIds,
const ArrayT &  solutionValues 
)
protected

Writes a particular field to an array as a coordinate diplacement. Notice this is setup to work with the worksets associated with Panzer.

Parameters
[in]fieldNameName of field to be filled
[in]blockIdName of block this set of elements belongs to
[in]dimensionWhat coordinate axis to write to
[in]localElementIdsLocal element IDs for this set of solution values
[in]solutionValuesAn two dimensional array object sized by (Cells,Basis Count)
Note
The block ID is not strictly needed in this context. However forcing the user to provide it does permit an additional level of safety. The implicit assumption is that the elements being "set" are part of the specified block. This prevents the need to perform a null pointer check on the field data, because the STK_Interface construction of the fields should force it to be nonnull...

Definition at line 959 of file Panzer_STK_Interface.hpp.

Member Data Documentation

◆ coordsString

const std::string panzer_stk::STK_Interface::coordsString = "coordinates"
static

Definition at line 784 of file Panzer_STK_Interface.hpp.

◆ nodesString

const std::string panzer_stk::STK_Interface::nodesString = "nodes"
static

Definition at line 785 of file Panzer_STK_Interface.hpp.

◆ edgesString

const std::string panzer_stk::STK_Interface::edgesString = "edges"
static

Definition at line 786 of file Panzer_STK_Interface.hpp.

◆ facesString

const std::string panzer_stk::STK_Interface::facesString = "faces"
static

Definition at line 787 of file Panzer_STK_Interface.hpp.

◆ periodicBCs_

std::vector<Teuchos::RCP<const PeriodicBC_MatcherBase> > panzer_stk::STK_Interface::periodicBCs_
protected

Definition at line 842 of file Panzer_STK_Interface.hpp.

◆ metaData_

Teuchos::RCP<stk::mesh::MetaData> panzer_stk::STK_Interface::metaData_
protected

Definition at line 844 of file Panzer_STK_Interface.hpp.

◆ bulkData_

Teuchos::RCP<stk::mesh::BulkData> panzer_stk::STK_Interface::bulkData_
protected

Definition at line 845 of file Panzer_STK_Interface.hpp.

◆ elementBlocks_

std::map<std::string, stk::mesh::Part*> panzer_stk::STK_Interface::elementBlocks_
protected

Definition at line 847 of file Panzer_STK_Interface.hpp.

◆ sidesets_

std::map<std::string, stk::mesh::Part*> panzer_stk::STK_Interface::sidesets_
protected

Definition at line 848 of file Panzer_STK_Interface.hpp.

◆ nodesets_

std::map<std::string, stk::mesh::Part*> panzer_stk::STK_Interface::nodesets_
protected

Definition at line 849 of file Panzer_STK_Interface.hpp.

◆ elementBlockCT_

std::map<std::string, Teuchos::RCP<shards::CellTopology> > panzer_stk::STK_Interface::elementBlockCT_
protected

Definition at line 850 of file Panzer_STK_Interface.hpp.

◆ nodesPart_

stk::mesh::Part* panzer_stk::STK_Interface::nodesPart_
protected

Definition at line 853 of file Panzer_STK_Interface.hpp.

◆ nodesPartVec_

std::vector<stk::mesh::Part*> panzer_stk::STK_Interface::nodesPartVec_
protected

Definition at line 854 of file Panzer_STK_Interface.hpp.

◆ edgesPart_

stk::mesh::Part* panzer_stk::STK_Interface::edgesPart_
protected

Definition at line 855 of file Panzer_STK_Interface.hpp.

◆ edgesPartVec_

std::vector<stk::mesh::Part*> panzer_stk::STK_Interface::edgesPartVec_
protected

Definition at line 856 of file Panzer_STK_Interface.hpp.

◆ facesPart_

stk::mesh::Part* panzer_stk::STK_Interface::facesPart_
protected

Definition at line 857 of file Panzer_STK_Interface.hpp.

◆ facesPartVec_

std::vector<stk::mesh::Part*> panzer_stk::STK_Interface::facesPartVec_
protected

Definition at line 858 of file Panzer_STK_Interface.hpp.

◆ coordinatesField_

VectorFieldType* panzer_stk::STK_Interface::coordinatesField_
protected

Definition at line 860 of file Panzer_STK_Interface.hpp.

◆ edgesField_

VectorFieldType* panzer_stk::STK_Interface::edgesField_
protected

Definition at line 861 of file Panzer_STK_Interface.hpp.

◆ facesField_

VectorFieldType* panzer_stk::STK_Interface::facesField_
protected

Definition at line 862 of file Panzer_STK_Interface.hpp.

◆ processorIdField_

ProcIdFieldType* panzer_stk::STK_Interface::processorIdField_
protected

Definition at line 863 of file Panzer_STK_Interface.hpp.

◆ loadBalField_

SolutionFieldType* panzer_stk::STK_Interface::loadBalField_
protected

Definition at line 864 of file Panzer_STK_Interface.hpp.

◆ fieldNameToSolution_

std::map<std::pair<std::string,std::string>,SolutionFieldType*> panzer_stk::STK_Interface::fieldNameToSolution_
protected

Definition at line 867 of file Panzer_STK_Interface.hpp.

◆ fieldNameToCellField_

std::map<std::pair<std::string,std::string>,SolutionFieldType*> panzer_stk::STK_Interface::fieldNameToCellField_
protected

Definition at line 868 of file Panzer_STK_Interface.hpp.

◆ dimension_

unsigned panzer_stk::STK_Interface::dimension_
protected

Definition at line 870 of file Panzer_STK_Interface.hpp.

◆ initialized_

bool panzer_stk::STK_Interface::initialized_
protected

Definition at line 872 of file Panzer_STK_Interface.hpp.

◆ entityCounts_

std::vector<std::size_t> panzer_stk::STK_Interface::entityCounts_
protected

Definition at line 875 of file Panzer_STK_Interface.hpp.

◆ maxEntityId_

std::vector<stk::mesh::EntityId> panzer_stk::STK_Interface::maxEntityId_
protected

Definition at line 878 of file Panzer_STK_Interface.hpp.

◆ procRank_

unsigned panzer_stk::STK_Interface::procRank_
protected

Definition at line 880 of file Panzer_STK_Interface.hpp.

◆ currentLocalId_

std::size_t panzer_stk::STK_Interface::currentLocalId_
protected

Definition at line 881 of file Panzer_STK_Interface.hpp.

◆ mpiComm_

Teuchos::RCP<Teuchos::MpiComm<int> > panzer_stk::STK_Interface::mpiComm_
protected

Definition at line 883 of file Panzer_STK_Interface.hpp.

◆ initialStateTime_

double panzer_stk::STK_Interface::initialStateTime_
protected

Definition at line 885 of file Panzer_STK_Interface.hpp.

◆ currentStateTime_

double panzer_stk::STK_Interface::currentStateTime_
protected

Definition at line 886 of file Panzer_STK_Interface.hpp.

◆ orderedElementVector_

Teuchos::RCP<std::vector<stk::mesh::Entity> > panzer_stk::STK_Interface::orderedElementVector_
mutableprotected

Definition at line 895 of file Panzer_STK_Interface.hpp.

◆ blockWeights_

std::map<std::string,double> panzer_stk::STK_Interface::blockWeights_
protected

Definition at line 898 of file Panzer_STK_Interface.hpp.

◆ localIDHash_

std::unordered_map<stk::mesh::EntityId,std::size_t> panzer_stk::STK_Interface::localIDHash_
protected

Definition at line 900 of file Panzer_STK_Interface.hpp.

◆ meshCoordFields_

std::map<std::string,std::vector<std::string> > panzer_stk::STK_Interface::meshCoordFields_
protected

Definition at line 905 of file Panzer_STK_Interface.hpp.

◆ meshDispFields_

std::map<std::string,std::vector<std::string> > panzer_stk::STK_Interface::meshDispFields_
protected

Definition at line 906 of file Panzer_STK_Interface.hpp.

◆ useFieldCoordinates_

bool panzer_stk::STK_Interface::useFieldCoordinates_
protected

Definition at line 908 of file Panzer_STK_Interface.hpp.

◆ useLowerCase_

bool panzer_stk::STK_Interface::useLowerCase_
protected

Definition at line 910 of file Panzer_STK_Interface.hpp.


The documentation for this class was generated from the following files: